Stem-loop sequence mmu-mir-654

Accession MI0005520
Symbol MGI:Mir654
Description Mus musculus miR-654 stem-loop
Gene family MIPF0000409; mir-654
Stem-loop 
------     uaagu  gaa      aagcu     a      uguuu 
      cucgg     gg   gauggu     gcaga caugug     c
      |||||     ||   ||||||     ||||| ||||||      
      ggguu     cc   cuacca     cgucu guauac     u
gucucu     ----u  --a      ---gu     -      uguac
Get sequence
Deep sequencing
10 reads, 2 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr12: 109723218-109723301 [+]
intergenic
Clustered miRNAs
< 10kb from mmu-mir-654
mmu-mir-329 chr12: 109713481-109713577 [+]
mmu-mir-494 chr12: 109715318-109715402 [+]
mmu-mir-679 chr12: 109715577-109715650 [+]
mmu-mir-1193 chr12: 109715671-109715791 [+]
mmu-mir-666 chr12: 109717085-109717183 [+]
mmu-mir-543 chr12: 109717258-109717333 [+]
mmu-mir-495 chr12: 109718754-109718816 [+]
mmu-mir-667 chr12: 109720006-109720097 [+]
mmu-mir-376c chr12: 109722718-109722803 [+]
mmu-mir-654 chr12: 109723218-109723301 [+]
mmu-mir-376b chr12: 109723458-109723539 [+]
mmu-mir-376a chr12: 109723781-109723848 [+]
mmu-mir-300 chr12: 109724313-109724391 [+]
mmu-mir-381 chr12: 109726822-109726896 [+]
mmu-mir-487b chr12: 109727333-109727414 [+]
mmu-mir-539 chr12: 109728129-109728202 [+]
mmu-mir-544 chr12: 109729325-109729402 [+]
Database links

Mature sequence mmu-miR-654-5p

Accession MIMAT0004897
Sequence

18 -  

ugguaagcugcagaacaugugu

 - 39

Get sequence
Evidence experimental; Solexa [2]
Predicted targets

Mature sequence mmu-miR-654-3p

Accession MIMAT0004898
Sequence

53 -  

uaugucugcugaccaucaccuu

 - 74

Get sequence
Evidence experimental; Solexa [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).