Stem-loop sequence hsa-mir-541

Accession

MI0005539 (change log)

Symbol

HGNC:MIR541

Description

Homo sapiens miR-541 stem-loop

Gene family

MIPF0000213; mir-541

Literature search

12 open access papers mention hsa-mir-541
(79 sentences)

Stem-loop

   -   -u     aaa        c    g uc      caaa      
5'  acg  caggg   ggauucug uguc g  ccacuc    guuca 
    |||  |||||   |||||||| |||| |  ||||||    |||| c
3'  ugu  gucuc   ucuaagac acgg u  gguggg    uaaga 
   g   uc     agg        -    g --      ----      

Deep sequencing

415 reads, 28.1 reads per million, 57 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 101064495-101064578 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-541

• hsa-mir-134: chr14: 101054687-101054759 [+]
• hsa-mir-668: chr14: 101055258-101055323 [+]
• hsa-mir-485: chr14: 101055419-101055491 [+]
• hsa-mir-323b: chr14: 101056219-101056300 [+]
• hsa-mir-154: chr14: 101059755-101059838 [+]
• hsa-mir-496: chr14: 101060573-101060674 [+]
• hsa-mir-377: chr14: 101062050-101062118 [+]
• hsa-mir-541: chr14: 101064495-101064578 [+]
• hsa-mir-409: chr14: 101065300-101065378 [+]
• hsa-mir-412: chr14: 101065447-101065537 [+]
• hsa-mir-369: chr14: 101065598-101065667 [+]
• hsa-mir-410: chr14: 101065912-101065991 [+]
• hsa-mir-656: chr14: 101066724-101066801 [+]

Database links

• EntrezGene:MIR541
• HGNC:MIR541
• RNAcentral:URS000075BC5F_9606
• miRBase Tracker:MI0005539

Mature sequence hsa-miR-541-5p

• Accession: MIMAT0004919
• Previous IDs: hsa-miR-541*
• Sequence: 10 - aaaggauucugcugucggucccacu - 34
• Deep sequencing: 140 reads, 31 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000076E54_9606
• Predicted targets:
  • TargetMiner:hsa-miR-541-5p
  • TargetScanVert:hsa-miR-541-5p
  • miRDB:hsa-miR-541-5p
  • microrna.org:hsa-miR-541-5p

Mature sequence hsa-miR-541-3p

• Accession: MIMAT0004920
• Previous IDs: hsa-miR-541
• Sequence: 54 - uggugggcacagaaucuggacu - 75
• Deep sequencing: 262 reads, 33 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-541-3p
  • TargetScanVert:hsa-miR-541-3p
  • miRDB:hsa-miR-541-3p
  • microrna.org:hsa-miR-541-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).