Stem-loop sequence hsa-mir-708

Accession

MI0005543 (change log)

Symbol

HGNC:MIR708

Description

Homo sapiens miR-708 stem-loop

Gene family

MIPF0000397; mir-708

Literature search

67 open access papers mention hsa-mir-708
(462 sentences)

Stem-loop

   -aa        a           a     c  ggg  aa   ac 
5'    cugcccuc aggagcuuaca ucuag ug   gu  aug  u
      |||||||| ||||||||||| ||||| ||   ||  |||  u
3'    gacgggag ucuucgagugu agauc ac   ca  uac  g
   agg        a           c     a  --a  ag   ac 

Deep sequencing

72596 reads, 184 reads per million, 148 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 79402022-79402109 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR708
• HGNC:MIR708
• RNAcentral:URS000062A2F0_9606
• miRBase Tracker:MI0005543

Mature sequence hsa-miR-708-5p

• Accession: MIMAT0004926
• Previous IDs: hsa-miR-708
• Sequence: 11 - aaggagcuuacaaucuagcuggg - 33
• Deep sequencing: 69176 reads, 147 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS000019D79B_9606
• Predicted targets:
  • TargetMiner:hsa-miR-708-5p
  • TargetScanVert:hsa-miR-708-5p
  • miRDB:hsa-miR-708-5p
  • microrna.org:hsa-miR-708-5p

Mature sequence hsa-miR-708-3p

• Accession: MIMAT0004927
• Previous IDs: hsa-miR-708*
• Sequence: 57 - caacuagacugugagcuucuag - 78
• Deep sequencing: 3354 reads, 126 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000049EEDF_9606
• Predicted targets:
  • TargetMiner:hsa-miR-708-3p
  • TargetScanVert:hsa-miR-708-3p
  • miRDB:hsa-miR-708-3p
  • microrna.org:hsa-miR-708-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).