Stem-loop sequence mmu-mir-449b

Accession

MI0005547

Symbol

MGI:Mir449b

Description

Mus musculus miR-449b stem-loop

Gene family

MIPF0000133; mir-449

Stem-loop

---   cuc    a     u  u   a c       guug  u 
   aga   gggu ggcag gu guu g uggcugc    gg c
   |||   |||| ||||| || ||| | |||||||    || a
   ucu   uuca ccguc ca cga c accgacg    cc g
cgg   ucc    -     c  u   - -       ---a  g 

Deep sequencing

2550 reads, 58 experiments

Genome context

• Coordinates (GRCm38): chr13: 113037419-113037498 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000109244 ; Cdc20b-201; intron 2

Clustered miRNAs

< 10kb from mmu-mir-449b

• mmu-mir-449c: chr13: 113035983-113036091 [+]
• mmu-mir-449b: chr13: 113037419-113037498 [+]
• mmu-mir-449a: chr13: 113037534-113037624 [+]

Database links

• ENTREZGENE: 100190765;Mir449b
• MGI: 3718803;Mir449b

Mature sequence mmu-miR-449b

• Accession: MIMAT0005447
• Sequence: 11 - aggcaguguuguuagcuggc - 30
• Deep sequencing: 2528 reads, 51 experiments
• Evidence: by similarity; MI0003673
• Predicted targets:
  • DIANA-MICROT:mmu-miR-449b
  • MICRORNA.ORG:mmu-miR-449b
  • MIRDB:mmu-miR-449b
  • RNA22-MMU:mmu-miR-449b
  • TARGETSCAN-VERT:mmu-miR-449b

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).