Stem-loop sequence mmu-mir-875

Accession MI0005551
Symbol MGI:Mir875
Description Mus musculus miR-875 stem-loop
Gene family MIPF0000424; mir-875
Stem-loop 
---  u    u  u   -       u  a       uuca 
   uc gugg ac aua ccucagu uu ucaggug    u
   || |||| || ||| ||||||| || |||||||    u
   ag cacu ug uau ggaguca aa aguccac    a
acg  u    u  -   c       u  a       uaaa
Get sequence
Deep sequencing
281 reads, 23 experiments
Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was independently shown in human and rat [2].

Genome context
Coordinates (GRCm38) Overlapping transcripts
chr15: 35660970-35661047 [-]
antisense
ENSMUST00000048646 ; Vps13b-201; intron 30
Clustered miRNAs
< 10kb from mmu-mir-875
mmu-mir-875 chr15: 35660970-35661047 [-]
mmu-mir-599 chr15: 35660831-35660918 [-]
Database links

Mature sequence mmu-miR-875-5p

Accession MIMAT0004937
Sequence

11 -  

uauaccucaguuuuaucaggug

 - 32

Get sequence
Deep sequencing 214 reads, 21 experiments
Evidence experimental; RAKE [1], Solexa [3]
Predicted targets

Mature sequence mmu-miR-875-3p

Accession MIMAT0004938
Sequence

46 -  

ccugaaaauacugaggcuaug

 - 66

Get sequence
Deep sequencing 66 reads, 3 experiments
Evidence experimental; RAKE [1], Solexa [3]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).