Stem-loop mtr-MIR171b

Accession

MI0005580

Description

Medicago truncatula mtr-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

8 open access papers mention mtr-MIR171b
(54 sentences)

Sequence

agcaagguauuggcgcgccucaauuugaauacauggcuauaaaaaugcaucauaucagccauguaguuUGAUUGAGCCGCGUCAAUAUCuuguu
.((((((((((((((((.(((((((....((((((((((((...........))).)))))))))....))))))).)))))))))))))))).

Structure

a                c       ugaa         -   aaaa 
 gcaagguauuggcgcg cucaauu    uacauggcu aua    u
 |||||||||||||||| |||||||    ||||||||| |||    g
 uguuCUAUAACUGCGC GAGUUAG    auguaccga uau    c
u                C       Uuug         c   acua 

Annotation confidence Not enough data

Genome context

chr2: 27393335-27393428 [+]

Mature mtr-miR171b

• Accession: MIMAT0011066
• Description: Medicago truncatula mtr-miR171b mature miRNA
• Sequence: 69 - UGAUUGAGCCGCGUCAAUAUC - 89
• Evidence: experimental ; 454 [2], Northern [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: