Stem-loop mtr-MIR171b

Accession

MI0005580

Description

Medicago truncatula mtr-MIR171b precursor miRNA

Literature search

10 open access papers mention mtr-MIR171b
(55 sentences)

Sequence

105671 reads, 1117.0 reads per million, 111 experiments

agcaAGGUAUUGGCGCGCCUCAAUUugaauacauggcuauaaaaaugcaucauaucagccauguaguuugaUUGAGCCGCGUCAAUAUCUUGuu
.((((((((((((((((.(((((((....((((((((((((...........))).)))))))))....))))))).)))))))))))))))).

Structure

a                C       ugaa         -   aaaa 
 gcaAGGUAUUGGCGCG CUCAAUU    uacauggcu aua    u
 |||||||||||||||| |||||||    ||||||||| |||    g
 uGUUCUAUAACUGCGC GAGUUag    auguaccga uau    c
u                C       uuug         c   acua 

Annotation confidence High

Genome context

chr2: 27393335-27393428 [+]

Mature mtr-miR171b-5p

• Accession: MIMAT0054765
• Description: Medicago truncatula mtr-miR171b-5p mature miRNA
• Sequence: 5 - AGGUAUUGGCGCGCCUCAAUU - 25
• Evidence: experimental ; unknown

Mature mtr-miR171b-3p

• Accession: MIMAT0011066
• Description: Medicago truncatula mtr-miR171b-3p mature miRNA
• Sequence: 72 - UUGAGCCGCGUCAAUAUCUUG - 92
• Evidence: experimental ; 454 [2], Northern [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: