miRBase entry: mtr-MIR399k

Stem-loop mtr-MIR399k


Accession
MI0005592
Description
Medicago truncatula mtr-MIR399k precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
9 open access papers mention mtr-MIR399k
(23 sentences)

Sequence

aaugauaggggaaaucucuuuuggcagagaggaguagcuagagagcuugaacaugcuugcuucuaguuUGCCAAAGAAGAUUUGCCCUGccauu
((((.(((((.((((((.((((((((((..(((..(((....((((........))))))))))..)))))))))).)))))).))))).))))

Structure
    a     g      c          ga   gu   uaga    uug 
aaug uaggg aaaucu uuuuggcaga  gga  agc    gagc   a
|||| ||||| |||||| ||||||||||  |||  |||    ||||    
uuac GUCCC UUUAGA GAAACCGUuu  ucu  ucg    uucg   a
    c     G      A          ga   --   ----    uac 


Annotation confidence Not enough data
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Genome context
chr8: 24004937-24005030 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mtr-MIR399k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR399k

Accession MIMAT0011078
Description Medicago truncatula mtr-miR399k mature miRNA
Sequence 69 - UGCCAAAGAAGAUUUGCCCUG - 89
Evidence not_experimental

References


  1. "Bonnet E"
    (2007) None: