miRBase entry: mtr-MIR319b

Stem-loop mtr-MIR319b


Accession
MI0005596
Description
Medicago truncatula mtr-MIR319b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
5 open access papers mention mtr-MIR319b
(35 sentences)

Sequence

uaagaGAGCUUUCUUUAGUCCACUCAugggugacaauaagauuucaauuagcugcugacucauucauccaaauguugaguaaaauauauagaaacauauacucaucaaaugagugaaugaugcgggagacaaauugaaucuuaaguuuccuauacUUGGACUGAAGGGAGCUCCCuuuuc
.(((.(((((((((((((((((...(((((.(((..(((((((.(((((.(((.(((..((((((((.((..((.((((((.................)))))).))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).)))...

Structure
--u   a                 CUC     u   aa       u     a -  g   ac        c  aa  u      aaauaua 
   aag GAGCUUUCUUUAGUCCA   Auggg gac  uaagauu caauu g cu cug  ucauucau ca  ug ugagua       u
   ||| |||||||||||||||||   ||||| |||  ||||||| ||||| | || |||  |||||||| ||  || ||||||       a
   uuC CUCGAGGGAAGUCAGGU   uaucc uug  auucuaa guuaa c ga ggc  aguaagug gu  ac acucau       g
cuu   C                 Uca     u   -a       -     a a  g   gu        a  aa  u      auacaaa 


Annotation confidence Not enough data
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Genome context
chr5: 2188491-2188670 [+]

Database links

Mature mtr-miR319b-3p

Accession MIMAT0011082
Description Medicago truncatula mtr-miR319b-3p mature miRNA
Sequence 156 - UUGGACUGAAGGGAGCUCCC - 175
Evidence experimental
454 [2], Illumina [3]

Mature mtr-miR319b-5p

Accession MIMAT0026727
Description Medicago truncatula mtr-miR319b-5p mature miRNA
Sequence 6 - GAGCUUUCUUUAGUCCACUCA - 26
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None:

  3. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105