Stem-loop sequence mtr-MIR164b

Accession

MI0005612 (change log)

Description

Medicago truncatula miR164b stem-loop

Gene family

MIPF0000045; MIR164

Literature search

4 open access papers mention mtr-MIR164b
(62 sentences)

Stem-loop

   -  a     a    ca         caau         ugaacauacacacaugauggaagugaauacaaa 
5'  ca gaugg gaag  gggcacgug    acuaacuca                                 g
    || ||||| ||||  |||||||||    |||||||||                                 a
3'  gu cuacc cuuc  cccguguac    ugauugagu                                 g
   a  a     c    uc         uucu         uaauuuuuuuacuuuguauucucuuacaucuaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 19001248-19001391 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005612

Mature sequence mtr-miR164b

• Accession: MIMAT0011098
• Sequence: 6 - uggagaagcagggcacgugca - 26
• Evidence: experimental; 454 [2], Northern [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).