miRBase entry: mtr-MIR160e

Stem-loop mtr-MIR160e


Accession
MI0005629
Description
Medicago truncatula mtr-MIR160e precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
5 open access papers mention mtr-MIR160e
(16 sentences)

Sequence

guaugUGCCUGGCUCCCUGUAUGCCAuauaugaagcucauugaaaaaucaaugaccuuuguggauggcguaugaggagccaagcauauucc
..((((((.(((((((.((((((((((.(((((((.(((((((....))))))).))))))).)))))))))).))))))).))))))...

Structure
-gu      C       C          a       c       a 
   augUGC UGGCUCC UGUAUGCCAu uaugaag ucauuga a
   |||||| ||||||| |||||||||| ||||||| |||||||  
   uauacg accgagg guaugcggua guguuuc aguaacu a
ccu      a       a          g       c       a 


Annotation confidence Not enough data
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Genome context
chr1: 27301457-27301547 [-]

Database links

Mature mtr-miR160e

Accession MIMAT0011115
Description Medicago truncatula mtr-miR160e mature miRNA
Sequence 6 - UGCCUGGCUCCCUGUAUGCCA - 26
Evidence experimental
454 [2], Northern [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None: