Stem-loop ghr-MIR166b

Accession

MI0005645

Description

Gossypium hirsutum ghr-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

20 open access papers mention ghr-MIR166b
(71 sentences)

Sequence

ugaggggaauguugucuggaccggggacacuuguguuucuaauccguuuucccugcaauauuguucugauuaacguggggaucuuuauauugcuuauuuuuguaauggauuaagguuguacuagugucgUCGGACCAGGCUUCAUUCCCCccaa
((.((((((((..((((((.((((.((((((.(((..(((((((((((......(((((((.(((((.((....)).)))))....)))))))..........)))))))).)))...))).)))))).)))).))))))..)))))))).)).

Structure

-  a        uu      a    g      u   -uu   -        ----uucccu       ---u     g  u 
 ug ggggaaug  gucugg ccgg gacacu gug   ucu aauccguu          gcaauau    guucu au a
 || ||||||||  |||||| |||| |||||| |||   ||| ||||||||          |||||||    ||||| ||  
 ac CCCCUUAC  CGGACC GGCU cuguga cau   gga uuagguaa          cguuaua    uaggg ug a
a  c        UU      A    g      u   guu   a        uguuuuuauu       uuuc     g  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR166b

• Accession: MIMAT0005813
• Description: Gossypium hirsutum ghr-miR166b mature miRNA
• Sequence: 130 - UCGGACCAGGCUUCAUUCCCC - 150
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751