Stem-loop ghr-MIR399a

Accession

MI0005652

Description

Gossypium hirsutum ghr-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

12 open access papers mention ghr-MIR399a
(40 sentences)

Sequence

ugagauauuacagggcaaaaucuucaguggcaggcaguauauggcuccauucaucaggcaucagcuguauggaaaauugcaguguguucucCGCCAAUGGAGAUUUGUCCGGuaauuccgguuc
((.((.(((((.(((((((.((((((.((((.((.(((((((.((....(((((..(((....)))..))))).....)).)))))..)))))))).))))))))))))).)))))))))....

Structure

----  a  u     a       a      g    a  c  --     g  -ucca     ca   a 
    ug ga auuac gggcaaa ucuuca uggc gg ag  uauau gc     uucau  ggc u
    || || ||||| ||||||| |||||| |||| || ||  ||||| ||     |||||  |||  
    gc cu uaauG CCUGUUU AGAGGU ACCG Cc uc  gugug cg     aggua  ucg c
cuug  -  -     G       -      A    -  -  uu     a  uuaaa     ug   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR399a

• Accession: MIMAT0005820
• Description: Gossypium hirsutum ghr-miR399a mature miRNA
• Sequence: 92 - CGCCAAUGGAGAUUUGUCCGG - 112
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751