Stem-loop ghr-MIR399b

Accession

MI0005653

Description

Gossypium hirsutum ghr-MIR399b precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

12 open access papers mention ghr-MIR399b
(33 sentences)

Sequence

ugagauauuacagggcaaaaucuucaguggcaggcagccauuguauauggcuccguucaucaggcaucagcuguauggaaaauugcaguguguucucCGCCAAUGGAGAUUUGUCCGGuaauuccggu
((.((.(((((.(((((((.((((((.((((.((.((((((.....))))))))........(((((..((((((........)))))))))))....)))).))))))))))))).)))))))))..

Structure

--  a  u     a       a      g    aggcagccauuguauauggcuccguucauca     ca      ugg 
  ug ga auuac gggcaaa ucuuca uggc                               ggcau  gcugua   a
  || || ||||| ||||||| |||||| ||||                               |||||  ||||||    
  gc cu uaauG CCUGUUU AGAGGU ACCG                               uugug  ugacgu   a
ug  -  -     G       -      A    ---------------------------Ccuc     --      uaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR399b

• Accession: MIMAT0005821
• Description: Gossypium hirsutum ghr-miR399b mature miRNA
• Sequence: 98 - CGCCAAUGGAGAUUUGUCCGG - 118
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751