miRBase entry: ppt-MIR160a

Stem-loop ppt-MIR160a


Accession
MI0005655
Description
Physcomitrella patens ppt-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
4 open access papers mention ppt-MIR160a
(11 sentences)

Sequence

ggaguggaacUGCCUGGCUCCCUGUAUGCCAccugcggggcuugccaaagugauugucgagcugcauagcuggcauccagggagccagacagaccuccu
((((.(...(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).))))).

Structure
-    u gaa   C           U      c   c g      c   a 
 ggag g   cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa g
 |||| |   ||| ||||||||||| |||||| ||| | |||||| ||| u
 ccuc c   gac gaccgagggac uacggu gau c ucgagc guu g
u    - --a   a           c      c   a g      u   a 


Annotation confidence Not enough data
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Genome context
Chr15: 9258342-9258440 [+]

Database links

Mature ppt-miR160a

Accession MIMAT0004347
Description Physcomitrella patens ppt-miR160a mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
454 [2]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769