miRBase entry: ppt-MIR897

Stem-loop ppt-MIR897


Accession
MI0005681
Description
Physcomitrella patens ppt-MIR897 precursor miRNA


Sequence

ucuuagcauucaaaugaccaaggugucgaugccaaaugccauucuuaucuUGAUCAAGUGGAAACUCAGCAAAugcggccacuucaacucuauucacuaucuugcacuugaugaaguaaagauucccaucucuaaagccuuuggcaacaucaucucuacccaaugucuuuauaaagcauccauucuuaucaaauuauaucuucuuggucacuucauaggcaag
.....((.......(((((((((((..(.(((((((.((...((((..(((.((((((((.((....((..((((.((.........)).))))..))...)).)))))))).)))..))))..............)).))))))).)..))).........(((.(((....)))))).......................))))))))........))...

Structure
ucuua  -auucaaa        -------------------------------------------------   uc a       u  -----------cau    au   G        G  ACUC  CA    c  cca 
     gc        ugaccaag                                                 gug  g ugccaaa gc              ucuu  cuU AUCAAGUG AA    AG  AAug gg   c
     ||        ||||||||                                                 |||  | ||||||| ||              ||||  ||| |||||||| ||    ||  |||| ||   u
     cg        acugguuc                                                 uac  c acgguuu cg              agaa  gaa uaguucac uu    uc  uuau uc   u
--gaa  gauacuuc        uucuauauuaaacuauucuuaccuacgaaauauuucuguaacccaucuc   ua a       c  aaaucucuacccuu    au   g        g  -cua  ac    c  aac 


Annotation confidence Not enough data
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Genome context
Chr18: 7020972-7021194 [+]

Database links

Mature ppt-miR897

Accession MIMAT0004368
Description Physcomitrella patens ppt-miR897 mature miRNA
Sequence 51 - UGAUCAAGUGGAAACUCAGCAAA - 73
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17359535
    Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
    Fattash I, Voss B, Reski R, Hess WR, Frank W
    BMC Plant Biol (2007) 7:13