Stem-loop ppt-MIR901

Accession

MI0005684

Description

Physcomitrella patens ppt-MIR901 precursor miRNA

Sequence

uaaaaaaaauaauauguugauaauauaugugaaaguaaauaaguauuaccuaagauaaguugcuaaaaggucaaaggcagcaaagguaaaaguaaguaacaaugguggcgacuagguuuaugauggcagcuaggauuuaagaggcggcuaGGUAAAGUGGCGGCUAGGUUAaguggcgacuaggguuucaucaaauggauguagaugaaguucagccauag
............(((.(((.((((((.(((........))).))))))..))).))).((((((...........))))))...............((((..((((.((.(((....((((..((((.(((...........))).)))).))))))).)).)))).)))).(((((((((...((((((((.....)))).))))..))))..)))))..

Structure

uaaaaaaaauaauauguugauaauauaugugaaaguaaauaaguauuaccuaagauaaguugcuaaaaggucaaaggcagcaaagguaaaaguaag    aa    g  g   aggu    ga    a   agga 
                                                                                                uaac  uggu gc acu    uuau  uggc gcu    u
                                                                                                ||||  |||| || |||    ||||  |||| |||    u
                                                                                                AUUG  AUCG CG UGA    AAUG  aucg cgg    u
----------------------------------------------gauaccgacuugaaguagauguagguaaacuacuuugggaucagcgguga    -G    G  G   ----    -G    g   agaa 

Annotation confidence Not enough data

Genome context

Chr13: 3937397-3937617 [+]

Mature ppt-miR901

• Accession: MIMAT0004371
• Description: Physcomitrella patens ppt-miR901 mature miRNA
• Sequence: 151 - GGUAAAGUGGCGGCUAGGUUA - 171
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13