Stem-loop cre-MIR918

Accession

MI0005697

Description

Chlamydomonas reinhardtii cre-MIR918 precursor miRNA

Gene family

MIPF0000374; MIR918

Sequence

ccaauacgagacgucugcaccgcacaugucucaggaagagaucguccguaguagcaagcugcuggaggguaucucggucagcaucucgauuggcaagacguccacuccggguacgcgccgcucaugcgaugacgccuucaucgcgugagcggcgugUACCUGAAGCGGACAUCUUGCcaaacgaaaugcugaccgagauacccugaaguagcuugcuaauaguggcgauguccuccugagacaugugcggcgcagacgucccgcauugg
(((((.((.(((((((((.(((((((((((((((((.((.((((((..((.((((((((((((..(((((((((((((((((((.(((.(((((((((.((((.((.(((((((((((((((((((((((((.....))))))))))))))))))))))))).)).)))).))))))))).))).)))))))))))))))))))..)))))))))))).))..)))))).)).))))))))))))))))).))))))))).)).)))))

Structure

     a  a         a                 a  g      cg  g            gg                   c   a         c    a  c                         c 
ccaau cg gacgucugc ccgcacaugucucagga ga aucguc  ua uagcaagcugcu  aggguaucucggucagcau ucg uuggcaaga gucc cu cggguacgcgccgcucaugcgauga g
||||| || ||||||||| ||||||||||||||||| || ||||||  || ||||||||||||  ||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||||||||||| c
gguua gc cugcagacg ggcguguacagaguccu cu uagcgg  au aucguucgauga  ucccauagagccagucgua agc aacCGUUCU CAGG GA GUCCAUgugcggcgagugcgcuacu c
     c  c         c                 c  g      ug  a            ag                   a   a         A    C  A                         u 

Annotation confidence Not enough data

Genome context

scaffold_6: 1014118-1014386 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cre-MIR918

Mature cre-miR918

• Accession: MIMAT0004385
• Description: Chlamydomonas reinhardtii cre-miR918 mature miRNA
• Sequence: 157 - UACCUGAAGCGGACAUCUUGC - 177
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203