Accession
MI0005709
Description
Chlamydomonas reinhardtii
cre-MIR919 precursor miRNA
Sequence
aaugcgggacgucugcgccgcacaugUCUCAGGAGGACAUCGCCACUauuagcaagcuacuucaggguaucucggucagcauuucguuuggcaagauguccgcuucagguacacgccgcucacgcgaugaaggcgucaucgcaugagcggcgcguacccggaguggacgucuugccAAUCGAGAUGCUGACCGAGAUacccuccagcagcuugcuacuacggacgaucucuuccugagacaugugcggugcagacgucucguauu
(((((((((((((((((((((((((((((((((((((.((((((..((.(((((((((.((..(((((((((((((((((((((((.(((((((((((((((((((.(((((.(((((((((.(((((((.....))))))).))))))))).))))).))))))))))))))))))).)))))))))))))))))))))))..)).))))))))).)).)).)))).)))))))))))))))))))))))))))))))))))))
(((((((((((((((((((((((((((((((((((((.((((((..((.(((((((((.((..(((((((((((((((((((((((.(((((((((((((((((((.(((((.(((((((((.(((((((.....))))))).))))))))).))))).))))))))))))))))))).)))))))))))))))))))))))..)).))))))))).)).)).)))).)))))))))))))))))))))))))))))))))))))
Structure
C - AC u a uc u a a c a
aaugcgggacgucugcgccgcacaugUCUCAGGAGGA AUCG CC Ua uagcaagcu cu aggguaucucggucagcauuucg uuggcaagauguccgcuuc gguac cgccgcuca gcgauga g
||||||||||||||||||||||||||||||||||||| |||| || || ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||| g
uuaugcucugcagacguggcguguacagaguccuucu uagc gg au aucguucga ga ucccaUAGAGCCAGUCGUAGAGC AAccguucugcaggugagg ccaug gcggcgagu cgcuacu c
c a -c c c cc U c c a g
Annotation confidence
Low
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Comments
Zhao et al. and Molner et al. independently identified a number of miR/miR* pairs expressed from this hairpin precursor [1,2]. The predominant product by extensive cloning is named here miR919.1 [2]. The second product (miR919.2) is also shown, but others are omitted for clarity.
Genome context
scaffold_6: 1014120-1014384 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cre-MIR919
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cre-miR919.2
| Accession | MIMAT0004399 |
| Description | Chlamydomonas reinhardtii cre-miR919.2 mature miRNA |
| Sequence | 27 - UCUCAGGAGGACAUCGCCACU - 47 |
| Evidence |
experimental
cloned [1-2] |
Mature cre-miR919.1
| Accession | MIMAT0004969 |
| Description | Chlamydomonas reinhardtii cre-miR919.1 mature miRNA |
| Sequence | 177 - AAUCGAGAUGCUGACCGAGAU - 197 |
| Evidence |
experimental
cloned [2] |
References
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