miRBase entry: cre-MIR917

Stem-loop cre-MIR917


Accession
MI0005710
Description
Chlamydomonas reinhardtii cre-MIR917 precursor miRNA


Sequence

gcagcaacggcucccagagcugaccaaugaggccauugacaaccgccugccgauucucuuugaagaaggcgagcgacuugucgcccgaauacagcgcccgaaauuuugucacgauccagucaccggcgugcgcuucgaugugcuguaacacaggucgcggcguagcuacucuuaaggccucaaccaaagggccuuugcggcgUUUCACGGUUAUGUUCGAAGucgguacuaacaaucugaaccaaagucggagcccaagucugaaccaaagucguuugguucagacuguuagugccgacuuugguucagacugcuagugccgacuucgaacauaaccgugaaacgccgcaaaggcccuuugguugaggacuuaagaguagcuacgccgcgaccuguguuacagcacaucgaagcgcacgccggugacuggaucgugacaaaauuucgggcgcuguauucgggcgacaagucgcucgccuucuucaaagagaaucggcaggcgguugucaauggccucauuggucagcugugggagccguugcugc
((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.((.((((((((((((((((.((...(((((((((((((....)))))))))))))....)).)))))))))))))))).)).)))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))

Structure
                g                                                                                                                                                               g                                                      a  a                a  -cca             g 
gcagcaacggcuccca agcugaccaaugaggccauugacaaccgccugccgauucucuuugaagaaggcgagcgacuugucgcccgaauacagcgcccgaaauuuugucacgauccagucaccggcgugcgcuucgaugugcuguaacacaggucgcggcguagcuacucuuaag ccucaaccaaagggccuuugcggcgUUUCACGGUUAUGUUCGAAGucgguacua ca ucugaaccaaagucgg gc    agucugaaccaaa u
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||    |||||||||||||  
cgucguugccgagggu ucgacugguuacuccgguaacuguuggcggacggcuaagagaaacuucuuccgcucgcugaacagcgggcuuaugucgcgggcuuuaaaacagugcuaggucaguggccgcacgcgaagcuacacgacauuguguccagcgccgcaucgaugagaauuc ggaguugguuucccggaaacgccgcaaagugccaauacaagcuucagccgugau gu agacuugguuucagcc ug    ucagacuugguuu c
                g                                                                                                                                                               a                                                      c  c                g  auug             g 


Annotation confidence Not enough data
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Genome context
scaffold_10: 1416466-1417010 [+]

Database links

Mature cre-miR917

Accession MIMAT0004404
Description Chlamydomonas reinhardtii cre-miR917 mature miRNA
Sequence 203 - UUUCACGGUUAUGUUCGAAG - 222
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17470535
    A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
    "Genes Dev (2007) 21:1190-1203