Stem-loop sequence hsa-mir-509-3

Accession

MI0005717 (change log)

Symbol

HGNC:MIR509-3

Description

Homo sapiens miR-509-3 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

32 open access papers mention hsa-mir-509-3
(200 sentences)

Stem-loop

   -- ug    c   - ug        g       --g  u 
5'   g  guac cua c  cagacgug caaucau   ua a
     |  |||| ||| |  |||||||| |||||||   ||  
3'   c  caug gau g  gucugcau guuagua   au a
   ua gu    a   g gu        g       aaa  u 

Deep sequencing

94722 reads, 352 reads per million, 103 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147259652-147259726 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-509-3

• hsa-mir-509-1: chrX: 147260532-147260625 [-]
• hsa-mir-509-3: chrX: 147259652-147259726 [-]
• hsa-mir-509-2: chrX: 147258760-147258850 [-]
• hsa-mir-514b: chrX: 147250151-147250230 [-]

Database links

• EntrezGene:MIR509-3
• HGNC:MIR509-3
• RNAcentral:URS000075B370_9606
• miRBase Tracker:MI0005717

Mature sequence hsa-miR-509-3-5p

• Accession: MIMAT0004975
• Sequence: 10 - uacugcagacguggcaaucaug - 31
• Deep sequencing: 47149 reads, 84 experiments
• Evidence: experimental; cloned [3]
• Database links:
  • RNAcentral:URS0000465F56_9606
• Predicted targets:
  • TargetMiner:hsa-miR-509-3-5p
  • TargetScanVert:hsa-miR-509-3-5p
  • miRDB:hsa-miR-509-3-5p
  • microrna.org:hsa-miR-509-3-5p

Mature sequence hsa-miR-509-3p

• Accession: MIMAT0002881
• Previous IDs: hsa-miR-509
• Sequence: 44 - ugauugguacgucuguggguag - 65
• Deep sequencing: 142713 reads, 70 experiments
• Evidence: experimental; array-cloned [1], cloned [2-3]
• Database links:
  • RNAcentral:URS00002E177F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-509-3p
  • TargetScanVert:hsa-miR-509-3p
  • miRDB:hsa-miR-509-3p
  • microrna.org:hsa-miR-509-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17573847 "Analysis of gene expression in normal and neoplastic human testis: new roles of RNA" Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E, Leffers H Int J Androl. 30:316-326(2007).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).