miRBase entry: hsa-mir-509-3

Stem-loop hsa-mir-509-3


Accession
MI0005717
Symbol
HGNC: MIR509-3
Description
Homo sapiens hsa-mir-509-3 precursor miRNA
Gene family
MIPF0000130; mir-506

Literature search
32 open access papers mention hsa-mir-509-3
(226 sentences)

Sequence

81267 reads, 1574 reads per million, 51 experiments
gugguacccUACUGCAGACGUGGCAAUCAUGuauaauuaaaaaUGAUUGGUACGUCUGUGGGUAGaguacugcau
(((((((.((((((((((((((.(((((((............))))))).))))))))).))))).)))))))..

Structure
--       c     -         G       Guaua 
  gugguac cUACU GCAGACGUG CAAUCAU     a
  ||||||| ||||| ||||||||| |||||||      
  cgucaug GAUGG UGUCUGCAU GUUAGUa     u
ua       a     G         G       aaaau 


Annotation confidence High
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Genome context
chrX: 147259652-147259726 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from hsa-mir-509-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-509-3p

Accession MIMAT0002881
Description Homo sapiens hsa-miR-509-3p mature miRNA
Sequence 44 - UGAUUGGUACGUCUGUGGGUAG - 65
Evidence experimental
array-cloned [1], cloned [2-3]
Database links
Predicted targets

Mature hsa-miR-509-3-5p

Accession MIMAT0004975
Description Homo sapiens hsa-miR-509-3-5p mature miRNA
Sequence 10 - UACUGCAGACGUGGCAAUCAUG - 31
Evidence experimental
cloned [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 15965474
    Identification of hundreds of conserved and nonconserved human microRNAs
    "Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z"
    "Nat Genet (2005) 37:766-770

  3. PubMed ID: 17573847
    Analysis of gene expression in normal and neoplastic human testis: new roles of RNA
    "Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E, Leffers H"
    "Int J Androl (2007) 30:316-326