miRBase entry: rrv-miR-rR1-1

Stem-loop rrv-miR-rR1-1

Accession

MI0005718

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-1 precursor miRNA

Sequence

gggucagaccccgCGAUCGCACCUUUGGCCGGCCGGccucugcccGGCCACCGAGGAUGCGGUCaaugggucgaaccc
((((..(((((...((((((((((((((((((.(((...))).)))))))..)))).)))))))...)))))..))))

Structure

    ca     cgC       -    --       C   c 
gggu  gaccc   GAUCGCA CCUU  UGGCCGG CGG  
||||  |||||   ||||||| ||||  ||||||| ||| c
ccca  cuggg   CUGGCGU GGAG  ACCGGcc guc  
    ag     uaa       A    CC       c   u

Annotation confidence Not enough data

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Genome context

AF210726.1: 116303-116380 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-1-5p

Accession	MIMAT0004406
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-1-5p mature miRNA
Sequence	14 - CGAUCGCACCUUUGGCCGGCCGG - 36
Evidence	experimental cloned [1]

Mature rrv-miR-rR1-1-3p

Accession	MIMAT0004407
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-1-3p mature miRNA
Sequence	46 - GGCCACCGAGGAUGCGGUC - 64
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27