miRBase entry: rrv-miR-rR1-4

Stem-loop rrv-miR-rR1-4

Accession

MI0005721

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-4 precursor miRNA

Sequence

ccguguugugauuUGGGGAGGGCGGUCAGCGCGCGuucccguguuuagggaauauguauaucgCUCGUUAACCGCCCUCCCGAGAuuacugcucgg
(((.((.(((((((.(((((((((((.((((.((((((((.......))))).........))).)))).))))))))))).))))))).)).)))

Structure

   u  u       G           C    C   ---------     gu 
ccg gu gugauuU GGGAGGGCGGU AGCG GCG         uuccc  g
||| || ||||||| ||||||||||| |||| |||         |||||  u
ggc cg cauuAGA CCCUCCCGCCA UUGC Cgc         aaggg  u
   u  u       G           A    U   uauauguau     au

Annotation confidence Not enough data

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Genome context

AF210726.1: 112235-112330 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-4-5p

Accession	MIMAT0004410
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-4-5p mature miRNA
Sequence	14 - UGGGGAGGGCGGUCAGCGCGCG - 35
Evidence	experimental cloned [1]

Mature rrv-miR-rR1-4-3p

Accession	MIMAT0004411
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-4-3p mature miRNA
Sequence	64 - CUCGUUAACCGCCCUCCCGAGA - 85
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27