miRBase entry: rrv-miR-rR1-5

Stem-loop rrv-miR-rR1-5


Accession
MI0005722
Description
Rhesus monkey rhadinovirus rrv-miR-rR1-5 precursor miRNA


Sequence

caucguaacgcccCCGGAACCCAAAGACACGUGCCCGuggucuuaagaucgggcguguucuuuggauuccgucucguuacgaug
((((((((((....(((((.(((((((.(((((((((..(((....))))))))))))))))))).)))))...))))))))))

Structure
          cccC     C       C         ug   u 
caucguaacg    CGGAA CCAAAGA ACGUGCCCG  guc u
||||||||||    ||||| ||||||| |||||||||  |||  
guagcauugc    gccuu gguuucu ugugcgggc  uag a
          -ucu     a       -         --   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AF210726.1: 111474-111557 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from rrv-miR-rR1-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rrv-miR-rR1-5

Accession MIMAT0004412
Description Rhesus monkey rhadinovirus rrv-miR-rR1-5 mature miRNA
Sequence 14 - CCGGAACCCAAAGACACGUGCCCG - 37
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17451774
    Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
    "Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
    "Virology (2007) 364:21-27