miRBase entry: rrv-miR-rR1-6

Stem-loop rrv-miR-rR1-6

Accession

MI0005723

Description

Rhesus monkey rhadinovirus rrv-miR-rR1-6 precursor miRNA

Sequence

gcggugaacCGCGGAAAGGUGUGCACAUCGUAaaaucacuacugCGAUGUACGCCCUUUCGCAGUuuacugc
(((((((((.((((((.((((((((..(((((..........))))))))))))).)))))).)))))))))

Structure

         C      A        CA     aaau 
gcggugaac GCGGAA GGUGUGCA  UCGUA    c
||||||||| |||||| ||||||||  |||||     
cgucauuUG CGCUUU CCGCAUGU  AGCgu    a
         A      C        --     cauc

Annotation confidence Not enough data

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Genome context

AF210726.1: 111174-111245 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rrv-miR-rR1-6

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature rrv-miR-rR1-6-5p

Accession	MIMAT0004413
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-6-5p mature miRNA
Sequence	10 - CGCGGAAAGGUGUGCACAUCGUA - 32
Evidence	experimental cloned [1]

Mature rrv-miR-rR1-6-3p

Accession	MIMAT0004414
Description	Rhesus monkey rhadinovirus rrv-miR-rR1-6-3p mature miRNA
Sequence	45 - CGAUGUACGCCCUUUCGCAGU - 65
Evidence	experimental cloned [1]

References

PubMed ID: 17451774
Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
"Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR"
"Virology (2007) 364:21-27