Stem-loop cgr-mir-21

Accession

MI0005725

Description

Cricetulus griseus cgr-mir-21 precursor miRNA

Gene family

MIPF0000060; mir-21

Literature search

1 open access papers mention cgr-mir-21
(3 sentences)

Sequence

8019998 reads, 112581 reads per million, 6 experiments

uguaccaccuugucgggUAGCUUAUCAGACUGAUGUUGAcuguugaaucucauggCAACAGCAGUCGAUGGGCUGUCugacauuuugguauc
.((((((...((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))...)))))).

Structure

u      ccu                A     A     A    u  a 
 guacca   ugucgggUAGCUUAUC GACUG UGUUG cugu ga  
 ||||||   |||||||||||||||| ||||| ||||| |||| || u
 uauggu   acaguCUGUCGGGUAG CUGAC ACAAC ggua cu  
c      uuu                -     G     -    -  c 

Annotation confidence High

Genome context

JH000425.1: 1284121-1284212 [+]

Mature cgr-miR-21-5p

• Accession: MIMAT0004417
• Description: Cricetulus griseus cgr-miR-21-5p mature miRNA
• Sequence: 18 - UAGCUUAUCAGACUGAUGUUGA - 39
• Evidence: experimental ; cloned [1], Illumina [2]

Mature cgr-miR-21-3p

• Accession: MIMAT0022937
• Description: Cricetulus griseus cgr-miR-21-3p mature miRNA
• Sequence: 56 - CAACAGCAGUCGAUGGGCUGUC - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17570552
   Initial identification of low temperature and culture stage induction of miRNA expression in suspension CHO-K1 cells
   "Gammell P, Barron N, Kumar N, Clynes M"
   "J Biotechnol (2007) 130:213-218


2. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75