Stem-loop sequence ame-mir-10

Accession

MI0005727 (change log)

Previous IDs

ame-mir-10-1

Description

Apis mellifera miR-10 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

3 open access papers mention ame-mir-10
(11 sentences)

Stem-loop

   ccc    ---a    u      cu   -  g    u           ugau 
5'    aguu    augc cuacau  acc cu uaga ccgaauuuguu    a
      ||||    |||| ||||||  ||| || |||| |||||||||||    a
3'    ucga    uacg ggugug  ugg ga aucu ggcuuaaacag    g
   -ca    gaca    u      uu   a  g    u           cgga 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000069.5: 2496380-2496479 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir10
• RNAcentral:URS000075D871_7460
• miRBase Tracker:MI0005727

Mature sequence ame-miR-10-5p

• Accession: MIMAT0004419
• Sequence: 22 - acccuguagauccgaauuugu - 42
• Evidence: experimental; RTPCR [1], Illumina [2]

References

1. PMID:17543122 "Computational and transcriptional evidence for microRNAs in the honey bee genome" Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG Genome Biol. 8:R97(2007).
2. PMID:22409512 "Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome" Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y Genes Brain Behav. 11:660-670(2012).