Stem-loop ame-mir-279a

Accession

MI0005734

Description

Apis mellifera ame-mir-279a precursor miRNA mir-279

Gene
family

RF00754; mir-279

Literature search

3 open access papers mention ame-mir-279a
(5 sentences)

Sequence

765700 reads, 9549.0 reads per million, 24 experiments

agaaaaugaaaaaauuuccugaauuugccaAAUGAGUGAAGGUCUAGUGCACAgaaaaugaaauugUGACUAGAUCCACACUCAUUAAguacguucaggu
.................(((((((.(((..((((((((..((((((((.(((((.........)))))))))))))..))))))))..))).))))))).

Structure

agaaaaugaaaaaauuu       u   ca        AA        G     aaa 
                 ccugaau ugc  AAUGAGUG  GGUCUAGU CACAg   a
                 ||||||| |||  ||||||||  |||||||| |||||   u
                 ggacuug aug  UUACUCAC  CUAGAUCA GUguu   g
----------------u       c   AA        AC        -     aaa 

Annotation confidence High

Genome context

CM000058.5: 9792013-9792112 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-279a

Mature ame-miR-279a-5p

• Accession: MIMAT0053065
• Description: Apis mellifera ame-miR-279a-5p mature miRNA
• Sequence: 31 - AAUGAGUGAAGGUCUAGUGCACA - 53
• Evidence: experimental ; RTPCR [1], Illumina [2]

Mature ame-miR-279a-3p

• Accession: MIMAT0004425
• Description: Apis mellifera ame-miR-279a-3p mature miRNA
• Sequence: 67 - UGACUAGAUCCACACUCAUUAA - 88
• Evidence: experimental ; RTPCR [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670