Stem-loop sequence ame-mir-71

AccessionMI0005741 (change log)
DescriptionApis mellifera miR-71 stem-loop
Gene family MIPF0000278; mir-71
Literature search

2 open access papers mention ame-mir-71
(5 sentences)

Stem-loop 
   guccuccuuc        u   uc         u              ucuca 
5'           gggcggau ccg  ugaaagaca ggguagugagaugu     c
             |||||||| |||  ||||||||| ||||||||||||||      
3'           cuugcuug ggc  acuuucugu ucuaucacucugcg     g
   -------cgu        c   cu         -              cuauc
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (AMEL4.5; GCA_000002195.1) Overlapping transcripts
CM000054.5: 1245684-1245783 [+]
intergenic
Clustered miRNAs
< 10kb from ame-mir-71
ame-mir-71CM000054.5: 1245684-1245783 [+]
ame-mir-2-3CM000054.5: 1246071-1246170 [+]
ame-mir-13aCM000054.5: 1246352-1246451 [+]
ame-mir-13bCM000054.5: 1246714-1246792 [+]
ame-mir-2-1CM000054.5: 1246924-1247012 [+]
ame-mir-2bCM000054.5: 1246930-1247007 [-]
ame-mir-2-2CM000054.5: 1247873-1247956 [+]
Database links

Mature sequence ame-miR-71-5p

Accession MIMAT0004432
Sequence

25 -  

ugaaagacauggguaguga

 - 43

Get sequence
Evidence experimental; array [1], RTPCR [1], Illumina [2]

References

1
PMID:17543122 "Computational and transcriptional evidence for microRNAs in the honey bee genome" Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG Genome Biol. 8:R97(2007).
2
PMID:22409512 "Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome" Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y Genes Brain Behav. 11:660-670(2012).