Stem-loop sequence ame-mir-79

AccessionMI0005742 (change log)
DescriptionApis mellifera miR-79 stem-loop
Gene family MIPF0000014; mir-9
Literature search

2 open access papers mention ame-mir-79
(3 sentences)

Stem-loop 
   uucaagacugucaaa   uu   -    a          a     c         a 
5'                gcu  ugc cuuu cuuugguaau uagcu uaugauuuu a
                  |||  ||| |||| |||||||||| ||||| ||||||||| u
3'                cga  acg gaaa gaaaccauua aucga auacuagga u
   --------------a   uc   a    c          g     a         a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (AMEL4.5; GCA_000002195.1) Overlapping transcripts
CM000066.5: 7887622-7887721 [+]
intergenic
Clustered miRNAs
< 10kb from ame-mir-79
ame-mir-306CM000066.5: 7887398-7887524 [+]
ame-mir-79CM000066.5: 7887622-7887721 [+]
ame-mir-9bCM000066.5: 7887633-7887724 [-]
Database links

Mature sequence ame-miR-79-3p

Accession MIMAT0004433
Sequence

67 -  

uaaagcuagauuaccaaagca

 - 87

Get sequence
Evidence experimental; RTPCR [2], Illumina [3-4]

References

1
PMID:17543122 "Computational and transcriptional evidence for microRNAs in the honey bee genome" Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG Genome Biol. 8:R97(2007).
2
PMID:20491979 "Correlated expression patterns of microRNA genes with age-dependent behavioural changes in honeybee" Behura SK, Whitfield CW Insect Mol Biol. 19:431-439(2010).
3
PMID:22409512 "Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome" Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y Genes Brain Behav. 11:660-670(2012).
4
PMID:26853694 "MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)" Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL Insect Mol Biol. 25:216-226(2016).