miRBase entry: bna-MIR171g

Stem-loop bna-MIR171g


Accession
MI0005771
Description
Brassica napus bna-MIR171g precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
5 open access papers mention bna-MIR171g
(14 sentences)

Sequence

gauauuggccugguucacucagauuacacacguacuauaugcauucucuuaguuaucUGAUUGAGCCGCGCCAAUAUCUc
(((((((((.(((((((.((((((.((........................)).)))))).))))))).)))))))))..

Structure
--         c       c      u  acacguacuau 
  gauauuggc ugguuca ucagau ac           a
  ||||||||| ||||||| |||||| ||            
  CUAUAACCG GCCGAGU AGUcua ug           u
cU         C       U      u  auucucuuacg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bna-miR171g

Accession MIMAT0004446
Description Brassica napus bna-miR171g mature miRNA
Sequence 58 - UGAUUGAGCCGCGCCAAUAUCU - 79
Evidence experimental
RTPCR [1], cloned [2]

References

  1. PubMed ID: 17367786
    Computational identification of novel microRNAs and targets in Brassica napus
    "Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM"
    "FEBS Lett (2007) 581:1464-1474

  2. PubMed ID: 17659282
    Cloning and characterization of microRNAs from Brassica napus
    "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
    "FEBS Lett (2007) 581:3848-3856