Stem-loop bna-MIR393

Accession

MI0005772

Description

Brassica napus bna-MIR393 precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

5 open access papers mention bna-MIR393
(20 sentences)

Sequence

UCCAAAGGGAUCGCAUUGAUCcuaaucaagcugaguuauucccgaauaauuauuuuaauuuuuucucaauggaaagauagaaaaaaaaaauuuugcuucguuuuccggaucaugcgaucucuucgga
(((.((((((((((((.(((((.(((.((((..(((((((....))))))).((((.((((((((.....)))))))).))))...........)))).)))....))))))))))))))))).)))

Structure

   A            U     ---u   c    ugaguuauucccgaauaauua    a        u 
UCC AAGGGAUCGCAU GAUCc    aau aagc                     uuuu auuuuuuc c
||| |||||||||||| |||||    ||| ||||                     |||| |||||||| a
agg uucucuagcgua cuagg    uug uucg                     aaag uagaaagg a
   c            -     ccuu   c    ----------uuuuaaaaaaa    a        u 

Annotation confidence Not enough data

Genome context

EM:DU101699: 116-242 [+]

Mature bna-miR393

• Accession: MIMAT0004447
• Description: Brassica napus bna-miR393 mature miRNA
• Sequence: 1 - UCCAAAGGGAUCGCAUUGAUC - 21
• Evidence: experimental ; RTPCR [1]

References

1. PubMed ID: 17367786
   Computational identification of novel microRNAs and targets in Brassica napus
   "Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM"
   "FEBS Lett (2007) 581:1464-1474