Stem-loop pta-MIR159a

Accession

MI0005778

Description

Pinus taeda pta-MIR159a precursor miRNA

Gene family

MIPF0000010; MIR159

Sequence

gauguguuggagcucccuucaguccaaccaaagcuugugcagcggugguucagcugcugauucaugcauucuacuucccuguccgugacucuccagcagccugaacaaaucaaucaaucgaccugcaugacaggauaguggugugcaugacgcaggagauguacugucacuaaacacgcauuucUUGGAUUGAAGGGAGCUCCAcuuauc
((((.((.(((((((((((((((((((..((.((.(((..((.((((((.((.((.(((..((((((((.(((((..((((((..((......))((((..(((.............)))..))))..))))))..))))).))))))))..))).)).)).)))))).))..))).)).))..))))))))))))))))))))).))))

Structure

    u  u                   cc  a  u   gc  c      u  g  g   au        u     uc      cgugacucucca    cc   acaaa 
gaug gu ggagcucccuucaguccaa  aa gc ugu  ag gguggu ca cu cug  ucaugcau cuacu  ccuguc            gcag  uga     u
|||| || |||||||||||||||||||  || || |||  || |||||| || || |||  |||||||| |||||  ||||||            ||||  |||     c
cuau cA CCUCGAGGGAAGUUAGGUU  uu cg aca  uc cuguca gu ga gac  aguacgug gguga  ggacag            cguc  gcu     a
    u  -                   cu  a  c   aa  a      u  a  g   gc        u     ua      ----------ua    ca   aacua 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR159a

• Accession: MIMAT0004990
• Description: Pinus taeda pta-miR159a mature miRNA
• Sequence: 185 - UUGGAUUGAAGGGAGCUCCA - 204
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098