Stem-loop pta-MIR171

Accession

MI0005785

Description

Pinus taeda pta-MIR171 precursor miRNA

Sequence

ugUGAUUGAGACGAGUCCAUAUCuucuucaggcgaagccuccaccacuccaaaagaacugaaugcagguuuccgaugcaucaaucucagugcacuagacaauaucauguuggaggguacagacagugccgccauguuuggauggaggagacccaggucuguuauuguucucgauacaca
((((((((((((((...........((((....))))(((((((((((((((....((((((((((.........))))).....)))))..................))))))(((((.....)))))........))).))))))((((....))))....))).))))))).))))

Structure

    -       -   GUCCAUAUCuucuucaggcgaag      -   -----------------------      --------------aaga     -----     ggu 
ugUG AUUGAGA CGA                       ccucca cca                       cuccaa                  acuga     augca   u
|||| ||||||| |||                       |||||| |||                       ||||||                  |||||     |||||   u
acac uagcucu guu                       ggaggu ggu                       gagguu                  ugacu     uacgu   c
    a       u   -------auugucuggacccaga      a   uuguaccgccgugacagacaugg      guacuauaacagaucacg     cuaac     agc 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR171

• Accession: MIMAT0004996
• Description: Pinus taeda pta-miR171 mature miRNA
• Sequence: 3 - UGAUUGAGACGAGUCCAUAUC - 23
• Evidence: not_experimental

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098