miRBase entry: pta-MIR319

Stem-loop pta-MIR319


Accession
MI0005786
Description
Pinus taeda pta-MIR319 precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

gauaaguggagcucccuucaauccaagaaaugcguguuuagugacaguacaucuccugcgucaugcacaccacuauccugucaugcaggucgauugauugauuuguucaggcugcuggagagucacggacagggaaguagaaugcaugaaucagcagcugaaccaccgcugcacaagcuuuggUUGGACUGAAGGGAGCUCCaaca
......((((((((((((((.(((((..((.((.(((.(((((...((.((.((.(((..(((((((..(.(((.(((((((..(((((((((....)))))))))...((((.......))))...))))))).))).)..)))))))..))).)).)).))...))))).))).)).))..))))).))))))))))))))...

Structure
gauaag              a     ga  u  g   u     aca  a  u  c   cg       ca c   a       -------------------au         u 
      uggagcucccuuca uccaa  aa gc ugu uagug   gu ca cu cug  ucaugca  c acu uccuguc                     gcaggucga u
      |||||||||||||| |||||  || || ||| |||||   || || || |||  |||||||  | ||| |||||||                     |||||||||  
      aCCUCGAGGGAAGU AGGUU  uu cg aca gucgc   ca gu ga gac  aguacgu  g uga gggacag                     uguuuaguu g
---aca              C     gg  u  a   c     cac  a  c  c   ua       aa a   a       gcacugagaggucgucggacu         a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The cloned miR319 sequence in [1] has a 5' terminal G residue, which is incompatible with the genome sequence and the hairpin shown here.

Genome context
Unknown

Database links

Mature pta-miR319

Accession MIMAT0004997
Description Pinus taeda pta-miR319 mature miRNA
Sequence 184 - UUGGACUGAAGGGAGCUCC - 202
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098