miRBase entry: pta-MIR408

Stem-loop pta-MIR408


Accession
MI0005790
Description
Pinus taeda pta-MIR408 precursor miRNA
Gene family
MIPF0000793; MIR408_2


Sequence

gagacagggacgaguuagggcaugggaguugcauaugcagaaacgucugcuucugccauucuuAUGCACUGCCUCUUCCCUGGCuc
(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))

Structure
   a      c   u   g          u   uau     a 
gag caggga gag uag gcaugggagu gca   gcaga a
||| |||||| ||| ||| |||||||||| |||   |||||  
cuC GUCCCU CUC GUC CGUAuucuua cgu   cgucu c
   G      U   C   A          c   cuu     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR408

Accession MIMAT0005001
Description Pinus taeda pta-miR408 mature miRNA
Sequence 64 - AUGCACUGCCUCUUCCCUGGC - 84
Evidence not_experimental

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098