miRBase entry: pta-MIR949

Stem-loop pta-MIR949


Accession
MI0005798
Description
Pinus taeda pta-MIR949 precursor miRNA
Gene family
MIPF0001455; MIR949


Sequence

agagccUCUCCGGGAAUCCAAUGCGCCuuccucuugaacgccuuucaacgcgcgugcugugcgugaaaacgcguuuaggaggaagguguauugauuuccggggaagcccu
((.((.((((((((((((.((((((((((((((((((((((.(((((.(((((.....))))))))))..)))))))))))))))))))))))))))))))))).)).))

Structure
  a  c            C                      -c     a     g 
ag gc UCUCCGGGAAUC AAUGCGCCuuccucuugaacgc  uuuca cgcgc u
|| || |||||||||||| ||||||||||||||||||||||  ||||| ||||| g
uc cg aggggccuuuag uuauguggaaggaggauuugcg  aaagu gcgug c
  c  a            -                      ca     -     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR949

Accession MIMAT0005009
Description Pinus taeda pta-miR949 mature miRNA
Sequence 7 - UCUCCGGGAAUCCAAUGCGCC - 27
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098