Stem-loop pta-MIR950b

Accession

MI0005800

Description

Pinus taeda pta-MIR950b precursor miRNA

Gene family

MIPF0000407; MIR950

Sequence

ggaaggugaucuuuacaUCAGGUCCUCGGUGGUUUAUugcucaucguuuguuuacgauaaaccaucguggagcagaugaaaagagcaccucc
(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))

Structure

   a    a     a    A G   U             --cu  u 
gga ggug ucuuu caUC G UCC CGGUGGUUUAUug    ca c
||| |||| ||||| |||| | ||| |||||||||||||    || g
ccu ccac agaaa guag c agg gcuaccaaauagc    gu u
   -    g     a    a g   u             auuu  u 

Annotation confidence Not enough data

Comments

The most commonly cloned miR950 sequence in [1] has an additional 3' GA sequence, which is incompatible with the genomic sequence and hairpin shown here.

Genome context

Unknown

Mature pta-miR950b

• Accession: MIMAT0005011
• Description: Pinus taeda pta-miR950b mature miRNA
• Sequence: 18 - UCAGGUCCUCGGUGGUUUAU - 37
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098