Stem-loop sequence osa-MIR529b

Accession

MI0005804 (change log)

Description

Oryza sativa miR529b stem-loop

Gene family

MIPF0000388; MIR529

Literature search

23 open access papers mention osa-MIR529b
(97 sentences)

Stem-loop

            -     au         a   a            ---gc  uu    uguuagau    gaa  a 
5' aucgugaag gcuaa  ggagaagag gag guacagcuuugg     gg  uagu        ggug   gu c
   ||||||||| |||||  ||||||||| ||| ||||||||||||     ||  ||||        ||||   ||  
3' uaguauuuu cgauu  cuucuucuc cuc caugucggaacc     uc  auca        ccgc   cg u
            u     cu         c   g            acuuu  cc    -------u    -ag  u 

Deep sequencing

457 reads, 250 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 15883024-15883161 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005804

Mature sequence osa-miR529b

• Accession: MIMAT0005015
• Sequence: 19 - agaagagagagaguacagcuu - 39
• Deep sequencing: 456 reads, 2 experiments
• Evidence: experimental; cloned [1], 454 [2]
• Database links:
  • RNAcentral:URS0000336A81_39947

References

1. PMID:17635765 "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development" Lu S, Sun YH, Amerson H, Chiang VL Plant J. 51:1077-1098(2007).
2. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).