Stem-loop sequence dme-mir-193

Accession

MI0005809 (change log)

Description

Drosophila melanogaster miR-193 stem-loop

Gene family

MIPF0000082; mir-193

Literature search

7 open access papers mention dme-mir-193
(11 sentences)

Stem-loop

   ugug   c         g         uu   au   c  -----------u   u   a 
5'     ugc cuuauuaug uugggauuu  uag  cag ag            uau gcu u
       ||| ||||||||| |||||||||  |||  ||| ||            ||| |||  
3'     aug gaguaauac aacccugaa  auc  guc uc            aua cga a
   --aa   a         -         uc   cg   a  uucuaaauauuu   c   u 

Deep sequencing

25916 reads, 350 reads per million, 48 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3L: 21574014-21574121 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000015C104_7227
• miRBase Tracker:MI0005809

Mature sequence dme-miR-193-5p

• Accession: MIMAT0020849
• Sequence: 19 - uugggauuuuuuagaucagcag - 40
• Deep sequencing: 14717 reads, 41 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00000BD78E_7227

Mature sequence dme-miR-193-3p

• Accession: MIMAT0005468
• Previous IDs: dme-miR-193
• Sequence: 73 - uacuggccuacuaagucccaac - 94
• Deep sequencing: 11176 reads, 45 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS00004347E7_7227
• Predicted targets:
  • TargetScanFly:dme-miR-193
  • microrna.org:dme-miR-193-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).