Stem-loop dme-mir-956

Accession

MI0005810

Description

Drosophila melanogaster dme-mir-956 precursor miRNA

Literature search

4 open access papers mention dme-mir-956
(31 sentences)

Sequence

4966512 reads, 32747 reads per million, 45 experiments

gaucguuaucGUGUUUGGAAUGGUCUCGUUAGCUaacggaugagcaagugcucggcucacuggcccaaaugcaguuugcccggagacgccgguuaacccagcacugaaauguguagUUUCGAGACCACUCUAAUCCAUUgcagcauuu
....(((...(((.(((((.((((((((..(((((.((.((.....((((((.((...((((((((....(((...)))..))....))))))...)).))))))...)).))))))).)))))))).)))))..)))...)))....

Structure

gauc   auc   -U     A        UU     a  g  gagca      c  cuc      ----  aaau   g 
    guu   GUG  UUGGA UGGUCUCG  AGCUa cg au     agugcu gg   acuggc    cc    gca  
    |||   |||  ||||| ||||||||  ||||| || ||     |||||| ||   ||||||    ||    ||| u
    cga   UAC  AAUCU ACCAGAGC  UUgau gu ua     ucacga cc   uggccg    gg    cgu  
uuua   cgU   CU     C        -U     -  g  --aag      c  aau      caga  --cc   u 

Annotation confidence High

Genome context

chr3L: 11773731-11773878 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-956

Mature dme-miR-956-3p

• Accession: MIMAT0005469
• Description: Drosophila melanogaster dme-miR-956-3p mature miRNA
• Sequence: 117 - UUUCGAGACCACUCUAAUCCAUU - 139
• Evidence: experimental ; 454 [1]

Mature dme-miR-956-5p

• Accession: MIMAT0020850
• Description: Drosophila melanogaster dme-miR-956-5p mature miRNA
• Sequence: 11 - GUGUUUGGAAUGGUCUCGUUAGCU - 34
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864