Stem-loop sequence dme-mir-956

Accession

MI0005810 (change log)

Description

Drosophila melanogaster miR-956 stem-loop

Gene family

MIPF0001983; mir-956

Literature search

4 open access papers mention dme-mir-956
(31 sentences)

Stem-loop

   gauc   a c   -u     a        uu     a  g  gag  a     c  cuc      ccaaaugcag 
5'     guu u gug  uugga uggucucg  agcua cg au   ca gugcu gg   acuggc          u
       ||| | |||  ||||| ||||||||  ||||| || ||   || ||||| ||   ||||||          u
3'     cga g uac  aaucu accagagc  uugau gu ua   gu cacga cc   uggccg          u
   uuua   c u   cu     c        -u     -  g  -aa  -     c  aau      cagaggcccg 

Deep sequencing

5504021 reads, 2.91e+04 reads per million, 46 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3L: 11773731-11773878 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dme-mir-956

• dme-mir-956: chr3L: 11773731-11773878 [-]
• dme-mir-314: chr3L: 11773012-11773101 [+]

Database links

• RNAcentral:URS000014ABB8_7227
• miRBase Tracker:MI0005810

Mature sequence dme-miR-956-5p

• Accession: MIMAT0020850
• Sequence: 11 - guguuuggaauggucucguuagcu - 34
• Deep sequencing: 5944 reads, 31 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000208626_7227

Mature sequence dme-miR-956-3p

• Accession: MIMAT0005469
• Previous IDs: dme-miR-956
• Sequence: 117 - uuucgagaccacucuaauccauu - 139
• Deep sequencing: 5497927 reads, 46 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00000A2528_7227
• Predicted targets:
  • TargetScanFly:dme-miR-956
  • microrna.org:dme-miR-956-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).