Stem-loop sequence dme-mir-958

Accession

MI0005812 (change log)

Description

Drosophila melanogaster miR-958 stem-loop

Gene family

MIPF0000912; mir-958

Literature search

2 open access papers mention dme-mir-958
(7 sentences)

Stem-loop

   --  c    cua   c           c   cuua     u  uuaau 
5'   gg gugu   ugg aaguagaauag agg    ucaca gu     u
     || ||||   ||| ||||||||||| |||    ||||| ||      
3'   cc caca   gcu uucaucuuauc ucu    agugu cg     c
   ug  -    aca   -           u   -uag     -  ucuaa 

Deep sequencing

111041 reads, 2.59e+03 reads per million, 48 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3L: 22669289-22669380 [-]
• Overlapping transcripts:

  sense

  FBtr0306851 ; CR43270-RA; exon 1

Database links

• RNAcentral:URS000015603F_7227
• miRBase Tracker:MI0005812

Mature sequence dme-miR-958-5p

• Accession: MIMAT0020852
• Sequence: 16 - aguagaauagcaggcuuaucaca - 38
• Deep sequencing: 8371 reads, 43 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000315A49_7227

Mature sequence dme-miR-958-3p

• Accession: MIMAT0005471
• Previous IDs: dme-miR-958
• Sequence: 58 - ugagauucuucuauucuacuuu - 79
• Deep sequencing: 102600 reads, 48 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS0000187D5B_7227
• Predicted targets:
  • TargetScanFly:dme-miR-958
  • microrna.org:dme-miR-958-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).