Stem-loop sequence dme-mir-375

Accession

MI0005813 (change log)

Description

Drosophila melanogaster miR-375 stem-loop

Gene family

MIPF0000114; mir-375

Literature search

5 open access papers mention dme-mir-375
(6 sentences)

Stem-loop

   --c      gc   --uu            g  au       guga  a 
5'    cgggca  gaa    acuugggccaag ga  gcaaacu    uc u
      ||||||  |||    |||||||||||| ||  |||||||    || c
3'    gccugu  cuu    ugaauucgguuu cu  uguuuga    ag c
   uca      -a   uuau            g  --       ---a  c 

Deep sequencing

211224 reads, 1.24e+03 reads per million, 47 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2L: 857542-857632 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000364CB9_7227
• miRBase Tracker:MI0005813

Mature sequence dme-miR-375-5p

• Accession: MIMAT0020853
• Sequence: 15 - acuugggccaagggaaugcaaacu - 38
• Deep sequencing: 1129 reads, 40 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00003E4019_7227

Mature sequence dme-miR-375-3p

• Accession: MIMAT0005472
• Previous IDs: dme-miR-375
• Sequence: 55 - uuuguucguuuggcuuaaguua - 76
• Deep sequencing: 210094 reads, 46 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS0000484F8B_7227
• Predicted targets:
  • TargetScanFly:dme-miR-375
  • microrna.org:dme-miR-375-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).