Stem-loop sequence dme-mir-960

Accession MI0005815
Description Drosophila melanogaster miR-960 stem-loop
Gene family MIPF0000897; mir-960
Stem-loop 
g     u      ca  cu    a          c     uu  ug 
 gguuu guacca  uu  gagu uuccagauug auagc  ug  c
 ||||| ||||||  ||  |||| |||||||||| |||||  ||   
 cuaaa uauggu  aa  uuca agggucuggc uaucg  au  u
-     c      ac  uu    c          a     uu  ca
Get sequence
Deep sequencing
7400 reads, 41 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2L: 5641063-5641155 [+]
antisense
FBtr0079114 ; CG31646-RA; intron 4
FBtr0079114 ; CG31646-RA; intron 4
FBtr0079114 ; CG31646-RA; intron 4
Clustered miRNAs
< 10kb from dme-mir-960
dme-mir-959 2L: 5640940-5641037 [+]
dme-mir-960 2L: 5641063-5641155 [+]
dme-mir-961 2L: 5641191-5641279 [+]
dme-mir-962 2L: 5641298-5641389 [+]
dme-mir-963 2L: 5641990-5642078 [+]
dme-mir-964 2L: 5642102-5642201 [+]

Mature sequence dme-miR-960-5p

Accession MIMAT0005474
Previous IDs dme-miR-960
Sequence

19 -  

ugaguauuccagauugcauagc

 - 40

Get sequence
Deep sequencing 6483 reads, 40 experiments
Evidence experimental; 454 [1]
Predicted targets

Mature sequence dme-miR-960-3p

Accession MIMAT0020855
Sequence

57 -  

uauacggucugggacacuuuua

 - 78

Get sequence
Deep sequencing 917 reads, 29 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).