Stem-loop sequence dme-mir-961

Accession MI0005816
Description Drosophila melanogaster miR-961 stem-loop
Gene family MIPF0001006; mir-961
Stem-loop 
ucaa   -       a c      ca    -u   u        uu 
    ggg ccgaguu c uuugau  ccag  aac gagauugu  c
    ||| ||||||| | ||||||  ||||  ||| ||||||||  u
    cuc gguucaa g aaacua  gguc  uug cuuuggca  g
--ag   a       - a      ac    uu   -        ua
Get sequence
Deep sequencing
848 reads, 27 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2L: 5641191-5641279 [+]
antisense
FBtr0079114 ; CG31646-RA; intron 4
FBtr0079114 ; CG31646-RA; intron 4
FBtr0079114 ; CG31646-RA; intron 4
Clustered miRNAs
< 10kb from dme-mir-961
dme-mir-959 2L: 5640940-5641037 [+]
dme-mir-960 2L: 5641063-5641155 [+]
dme-mir-961 2L: 5641191-5641279 [+]
dme-mir-962 2L: 5641298-5641389 [+]
dme-mir-963 2L: 5641990-5642078 [+]
dme-mir-964 2L: 5642102-5642201 [+]

Mature sequence dme-miR-961-5p

Accession MIMAT0005475
Previous IDs dme-miR-961
Sequence

18 -  

uuugaucaccaguaacugagau

 - 39

Get sequence
Deep sequencing 421 reads, 21 experiments
Evidence experimental; 454 [1]
Predicted targets

Mature sequence dme-miR-961-3p

Accession MIMAT0020856
Sequence

55 -  

uucguuuucuggcaaucaaaag

 - 76

Get sequence
Deep sequencing 426 reads, 22 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).