Stem-loop sequence dme-mir-964

Accession MI0005819
Description Drosophila melanogaster miR-964 stem-loop
Gene family MIPF0000949; mir-964
Stem-loop 
caauaacauau     --   c   c             agc        uguuu 
           ugguc  caa uug cuuagaauagggg   uuaacuua     u
           |||||  ||| ||| |||||||||||||   ||||||||     u
           acuag  guu aac gaaucuugucucc   aauugaau     g
-----------     ua   u   a             gaa        uugua
Get sequence
Deep sequencing
12400 reads, 43 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2L: 5642102-5642201 [+]
antisense
FBtr0079114 ; CG31646-RA; intron 3
FBtr0079114 ; CG31646-RA; intron 3
FBtr0079114 ; CG31646-RA; intron 3
Clustered miRNAs
< 10kb from dme-mir-964
dme-mir-959 2L: 5640940-5641037 [+]
dme-mir-960 2L: 5641063-5641155 [+]
dme-mir-961 2L: 5641191-5641279 [+]
dme-mir-962 2L: 5641298-5641389 [+]
dme-mir-963 2L: 5641990-5642078 [+]
dme-mir-964 2L: 5642102-5642201 [+]

Mature sequence dme-miR-964-5p

Accession MIMAT0005478
Previous IDs dme-miR-964
Sequence

26 -  

uuagaauaggggagcuuaacuu

 - 47

Get sequence
Deep sequencing 12110 reads, 43 experiments
Evidence experimental; 454 [1-2], Solexa [2]
Predicted targets

Mature sequence dme-miR-964-3p

Accession MIMAT0020859
Sequence

64 -  

aguuaaaagccucuguucuaag

 - 85

Get sequence
Deep sequencing 205 reads, 17 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).