Stem-loop sequence dme-mir-932

Accession

MI0005820 (change log)

Description

Drosophila melanogaster miR-932 stem-loop

Gene family

MIPF0000588; mir-932

Literature search

4 open access papers mention dme-mir-932
(10 sentences)

Stem-loop

   -uu    - ug     u    u          a        u  uu 
5'    gguu u  aaguu ucaa uccguagugc uugcagug gu  c
      |||| |  ||||| |||| |||||||||| |||||||| ||   
3'    ccag a  uucaa gguu aggcgucgcg aacgucau ua  a
   cuu    c gu     c    u          -        u  uu 

Deep sequencing

24907 reads, 473 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2L: 6902062-6902152 [+]
• Overlapping transcripts:

  sense

  FBtr0307033 ; neuroligin-RB; intron 3

  FBtr0079344 ; neuroligin-RA; intron 3

Database links

• RNAcentral:URS000050AE23_7227
• miRBase Tracker:MI0005820

Mature sequence dme-miR-932-5p

• Accession: MIMAT0005479
• Previous IDs: dme-miR-932
• Sequence: 16 - ucaauuccguagugcauugcag - 37
• Deep sequencing: 23088 reads, 49 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS00004F1775_7227
• Predicted targets:
  • TargetScanFly:dme-miR-932
  • microrna.org:dme-miR-932-5p

Mature sequence dme-miR-932-3p

• Accession: MIMAT0020860
• Sequence: 55 - ugcaagcgcugcggauuuggca - 76
• Deep sequencing: 1819 reads, 41 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000302C6A_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).