miRBase entry: dme-mir-973

Stem-loop dme-mir-973


Accession
MI0005830
Description
Drosophila melanogaster dme-mir-973 precursor miRNA
Gene family
MIPF0001970; mir-973

Literature search
1 open access papers mention dme-mir-973
(1 sentences)

Sequence

613 reads, 277 reads per million, 28 experiments
accgucgucgacuuuucgUGGUUGGUGGUUGAACUUCGAUUUUaaguauuuaaauaaaaugaaaUCUGUUCAUUCUCCGACACAAGaaguucacgcaaagg
.((..(((.(((((((.(((.((((.((.(((((...(((((((...............))))))).))))).)).))))))).))))))).)))....))

Structure
a  --gu   c       c   G    U  U     UUC       aguauu 
 cc    cgu gacuuuu gUG UUGG GG UGAAC   GAUUUUa      u
 ||    ||| ||||||| ||| |||| || |||||   |||||||      a
 gg    gca uugaaGA CAC AGCC CU ACUUG   CUaaagu      a
-  aaac   c       A   -    U  U     --U       aaaaua 


Annotation confidence High
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Genome context
chrX: 19551528-19551628 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from dme-mir-973
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-973-5p

Accession MIMAT0005489
Description Drosophila melanogaster dme-miR-973-5p mature miRNA
Sequence 19 - UGGUUGGUGGUUGAACUUCGAUUUU - 43
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-973-3p

Accession MIMAT0020870
Description Drosophila melanogaster dme-miR-973-3p mature miRNA
Sequence 65 - UCUGUUCAUUCUCCGACACAAG - 86
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864