miRBase entry: dme-mir-975

Stem-loop dme-mir-975


Accession
MI0005832
Description
Drosophila melanogaster dme-mir-975 precursor miRNA
Gene family
MIPF0001038; mir-975

Literature search
3 open access papers mention dme-mir-975
(8 sentences)

Sequence

812 reads, 378 reads per million, 18 experiments
uugaauuuuugauuuUAAACACUUCCUACAUCCUGUAUguguuuugcauccgguACAGAUGUGGGAGUCGUUUGCAcucagagauuucaca
..((((((((((...((((((((.((((((((.(((((((((...))))...)))))))))))))))).)))))...))))))))))....

Structure
--uu          uuu     -   U        C     ---    u 
    gaauuuuuga   UAAAC ACU CCUACAUC UGUAU   gugu  
    ||||||||||   ||||| ||| |||||||| |||||   |||| u
    uuuagagacu   GUUUG UGA GGGUGUAG ACAug   uacg  
acac          cAC     C   -        -     gcc    u 


Annotation confidence High
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Genome context
chrX: 19558753-19558843 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from dme-mir-975
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-975-5p

Accession MIMAT0005491
Description Drosophila melanogaster dme-miR-975-5p mature miRNA
Sequence 16 - UAAACACUUCCUACAUCCUGUAU - 38
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-975-3p

Accession MIMAT0020872
Description Drosophila melanogaster dme-miR-975-3p mature miRNA
Sequence 55 - ACAGAUGUGGGAGUCGUUUGCA - 76
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864