Stem-loop sequence dme-mir-977

Accession MI0005834
Description Drosophila melanogaster miR-977 stem-loop
Gene family MIPF0000931; mir-977
Stem-loop 
cgaaucaacaa    gg    c          uc       a    uucagug 
           acaa  uaug uuuagauaac  gaauauc cauc       u
           ||||  |||| ||||||||||  ||||||| ||||       u
           uguu  guac aaaucuguug  cuuauag guag       c
----------a    uu    u          ca       a    ucuaaag
Get sequence
Deep sequencing
15757 reads, 39 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 19453055-19453153 [+]
intergenic
Clustered miRNAs
< 10kb from dme-mir-977
dme-mir-972 X: 19445185-19445275 [+]
dme-mir-973 X: 19445561-19445661 [+]
dme-mir-974 X: 19445711-19445811 [+]
dme-mir-2499 X: 19451041-19451136 [+]
dme-mir-4966 X: 19452403-19452529 [+]
dme-mir-975 X: 19452786-19452876 [+]
dme-mir-976 X: 19452928-19453024 [+]
dme-mir-977 X: 19453055-19453153 [+]
dme-mir-978 X: 19455269-19455360 [+]
dme-mir-979 X: 19455870-19455964 [+]

Mature sequence dme-miR-977-5p

Accession MIMAT0020874
Sequence

25 -  

uagauaacucgaauaucacauc

 - 46

Get sequence
Deep sequencing 317 reads, 17 experiments
Evidence not experimental
Predicted targets

Mature sequence dme-miR-977-3p

Accession MIMAT0005493
Previous IDs dme-miR-977
Sequence

66 -  

ugagauauucacguugucuaa

 - 86

Get sequence
Deep sequencing 15332 reads, 39 experiments
Evidence experimental; 454 [1-2], Solexa [2]
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).