Stem-loop dme-mir-978

Accession

MI0005835

Description

Drosophila melanogaster dme-mir-978 precursor miRNA mir-978

Gene
family

RF03773; mir-978

Literature search

1 open access papers mention dme-mir-978
(1 sentences)

Sequence

1005 reads, 486 reads per million, 34 experiments

guuggcggcacaaucUGCAAUCUACGCCACUGGCUUACGuugcaaucgaaaaucgUGUCCAGUGCCGUAAAUUGCAGuugugugaacgcaaa
....(((((((((.(((((((.((((.((((((..((((..............)))).)))))).)))).)))))))))))))...)))...

Structure

guug   ---      u       C    C      CU    uugcaa 
    gcg   gcacaa cUGCAAU UACG CACUGG  UACG      u
    |||   |||||| ||||||| |||| ||||||  ||||       
    cgc   uguguu GACGUUA AUGC GUGACC  GUgc      c
-aaa   aag      -       A    C      -U    uaaaag 

Annotation confidence High

Genome context

chrX: 19561236-19561327 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dme-mir-978

Mature dme-miR-978-3p

• Accession: MIMAT0005494
• Description: Drosophila melanogaster dme-miR-978-3p mature miRNA
• Sequence: 56 - UGUCCAGUGCCGUAAAUUGCAG - 77
• Evidence: experimental ; 454 [1]

Mature dme-miR-978-5p

• Accession: MIMAT0020875
• Description: Drosophila melanogaster dme-miR-978-5p mature miRNA
• Sequence: 16 - UGCAAUCUACGCCACUGGCUUACG - 39
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864